PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11264_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 166aa    MW: 17905.4 Da    PI: 9.7415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11264_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-191867255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  RrC11264_p2 18 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67
                 678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-301774No hitNo description
SMARTSM003803.6E-341881IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-291975IPR001471AP2/ERF domain
PfamPF008472.4E-121967IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-211976IPR016177DNA-binding domain
PRINTSPR003671.6E-81930IPR001471AP2/ERF domain
PRINTSPR003671.6E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MNTTSSKSKK KQEEGGTRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGTRA RTNFVYSDMP HSSSVTSIIS PDDPPPPPPP AAAPPPPAAS CLLCQATCPI  120
LVIANHSGAL TTTRPLPISR VTTSIVQCSA QCLLFLTLST TSAPIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-201674362ATERF1
2gcc_A1e-201674362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052301e-93AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBankAF2165811e-93AF216581.1 Arabidopsis thaliana AP2/EREBP-like transcription factor LEAFY PETIOLE gene, partial cds.
GenBankAY5608521e-93AY560852.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13910) mRNA, complete cds.
GenBankBT0249191e-93BT024919.1 Arabidopsis thaliana At5g13910 mRNA, complete cds.
GenBankCP0026881e-93CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666048.13e-57PREDICTED: ethylene-responsive transcription factor LEP-like
RefseqXP_013667877.13e-57PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6443e-55LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A078K3X44e-56A0A078K3X4_BRANA; BnaCnng78540D protein
TrEMBLA0A0D3EFN36e-57A0A0D3EFN3_BRAOL; Uncharacterized protein
STRINGBra008793.1-P7e-55(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-40ERF family protein